- Dactylogyridae Bychowsky 1933
- Dactylopteridae Rafinesque 1810
- Dallinidae Beecher 1893
- Damaeidae Berlese 1896
- Daniconematidae Moravec & Køie 1987
- Daphniphyllaceae Müller Argoviensis 1869
- Darcythompsoniidae Lang 1936
- Darwinulidae G.S. Brady & Norman 1889
- Dasyatidae D.S. Jordan 1888
- Dasyuridae Goldfuss 1820
- Davaineidae Braun 1900
- Delphinidae Gray 1821
- Dendrophylliidae Gray 1847
- Dennstaedtiaceae Lotsy 1909
- Desmarestiaceae (Thuret) Kjellman 1880
- Dexaminidae Leach 1814
- Diadematidae Gray 1855
- Diadumenidae Stephenson 1920
- Diapheridae Penha & Naggs
- Diaptomidae Baird 1850
- Diaspididae
- Diastylidae Bate 1856
- Diclidophoridae Fuhrmann 1928
- Dicrocoeliidae Looss 1899
- Dicroglossidae Anderson 1871
- Dicruridae Vigors 1825
- Dictyotaceae Lamouroux ex Dumortier 1822
- Dilepididae Railliet & Henry 1909
- Dioctophymatidae Railliet 1915
- Diodontidae Bonaparte 1838
- Diogenidae Ortmann 1892
- Diphyllobothriidae Lühe 1910
- Diploastreidae Chevalier & Beauvais 1987
- Diplommatinidae L. Pfeiffer 1857
- Diplostomatidae Poirier 1886
- Diplotriaenidae Skryabin 1916
- Dipodidae Fischer de Waldheim 1817
- Diprionidae Rohwer 1911
- Dipterocarpaceae Blume 1825
- Dipylidiidae Stiles 1896
- Discamminidae Mikhalevich 1980
- Discinidae Gray 1840
- Dogielinotidae Gurjanova 1953
- Donacidae Fleming 1828
- Dorvilleidae Chamberlin 1919
- Dotillidae Stimpson 1858
- Drepaneidae T.N. Gill 1872
- Drosophilidae Róndani 1856
- Dyscoliidae Fischer & Oehlert 1892
- Dytiscidae Leach 1815